Scaffold Ga0187890_10045563

Overview

Basic Information

• Taxon OID: 3300018044
• Scaffold ID: Ga0187890_10045563
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2626
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055369	Metagenome	138	Y
F094770	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187890_100455631	F055369	N/A	VPAFVATYGSDELRELEARAEFLGAIEDGEDVNLTKADLAYLKALEAWIDMYPEMRTTE
Ga0187890_100455632	F094770	AGGTGG	VPLLAVLPLLVLMAPMAASAGTASAPRAPVGASSVAKGVHFVGTVTVTEHQVWDYSASWVAEHGARNITGHVKLDLVVSGTQVVSFKATAVAVNGLMHLIEQIHPSHCDITTTHTLDTKGVFSASGSLGELALNWPMVDHQVDVGSCPGEPQGTNNFHVRWGTGAPSGLATGHCTTRDNSANGIVVYDSTYKPPFGTGGVGSATTDTCKGELRKL