Basic Information | |
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Taxon OID | 3300018042 Open in IMG/M |
Scaffold ID | Ga0187871_10001170 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23261 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002101 | Metagenome / Metatranscriptome | 593 | Y |
F003337 | Metagenome / Metatranscriptome | 493 | Y |
F004095 | Metagenome / Metatranscriptome | 453 | Y |
F014407 | Metagenome / Metatranscriptome | 263 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187871_1000117015 | F014407 | GGAGG | MRVYLTGCMLVLFSALGIAFAQDTNFSSGPQYLMNYGSPLFARPISTPSISLAGPPLEVGASNATGVLIAGAENQTVLPPRPDALPQIDLFPIFYGRPAASVIEISFSPEASSNPLPGSILDTGVLQLTTVQALRARGYGVTFVEAAAYGRAQTRRANRVYTNADIDRLHSGS |
Ga0187871_100011704 | F003337 | N/A | MVFLCPLSLLAGDTGAAVVHTKGGVWVNGAEVADSTAIFAGDLLETKPGSVANLDAEGSSVLIQPQSVVKFQSNFLSLEHGSVSVGTSTSMSVHVNCIKVEPASNERTQYDVTDVAGIVQVAAHKNDVNLTETSALRKVTPENNSSQSAVVHAGEQATRDEAKACGEASRPEPASNGMNTKWLEIGGGIAGGGVVLCLILCRGSKPPSVSPSDP |
Ga0187871_100011705 | F004095 | AGGAG | MSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVPPAAQASAANNNKEKVA |
Ga0187871_100011706 | F002101 | AGAAGG | MTTPVPILPQPNPESIPAKKRRVLLLDSSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGETDSRDKFCTDLRSASPPQRIAFFVGGPEYLAAAPHSDNAPAELDADALHKQMVAALLAQASAASSQQRWGILEACRKISSVRALSEAKSRAIRETPRPSRWAEAIEQHSPPEAVIPQPLFAPEIVAAEIVSTEMERTETEREELL |
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