NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187871_10001170

Scaffold Ga0187871_10001170


Overview

Basic Information
Taxon OID3300018042 Open in IMG/M
Scaffold IDGa0187871_10001170 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23261
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y
F014407Metagenome / Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0187871_1000117015F014407GGAGGMRVYLTGCMLVLFSALGIAFAQDTNFSSGPQYLMNYGSPLFARPISTPSISLAGPPLEVGASNATGVLIAGAENQTVLPPRPDALPQIDLFPIFYGRPAASVIEISFSPEASSNPLPGSILDTGVLQLTTVQALRARGYGVTFVEAAAYGRAQTRRANRVYTNADIDRLHSGS
Ga0187871_100011704F003337N/AMVFLCPLSLLAGDTGAAVVHTKGGVWVNGAEVADSTAIFAGDLLETKPGSVANLDAEGSSVLIQPQSVVKFQSNFLSLEHGSVSVGTSTSMSVHVNCIKVEPASNERTQYDVTDVAGIVQVAAHKNDVNLTETSALRKVTPENNSSQSAVVHAGEQATRDEAKACGEASRPEPASNGMNTKWLEIGGGIAGGGVVLCLILCRGSKPPSVSPSDP
Ga0187871_100011705F004095AGGAGMSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVPPAAQASAANNNKEKVA
Ga0187871_100011706F002101AGAAGGMTTPVPILPQPNPESIPAKKRRVLLLDSSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGETDSRDKFCTDLRSASPPQRIAFFVGGPEYLAAAPHSDNAPAELDADALHKQMVAALLAQASAASSQQRWGILEACRKISSVRALSEAKSRAIRETPRPSRWAEAIEQHSPPEAVIPQPLFAPEIVAAEIVSTEMERTETEREELL

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