Scaffold Ga0187871

Basic Information
Taxon OID	3300018042 Open in IMG/M
Scaffold ID	Ga0187871_10001170 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23261
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23261

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y
F014407	Metagenome / Metatranscriptome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187871_1000117015	F014407	GGAGG	MRVYLTGCMLVLFSALGIAFAQDTNFSSGPQYLMNYGSPLFARPISTPSISLAGPPLEVGASNATGVLIAGAENQTVLPPRPDALPQIDLFPIFYGRPAASVIEISFSPEASSNPLPGSILDTGVLQLTTVQALRARGYGVTFVEAAAYGRAQTRRANRVYTNADIDRLHSGS
Ga0187871_100011704	F003337	N/A	MVFLCPLSLLAGDTGAAVVHTKGGVWVNGAEVADSTAIFAGDLLETKPGSVANLDAEGSSVLIQPQSVVKFQSNFLSLEHGSVSVGTSTSMSVHVNCIKVEPASNERTQYDVTDVAGIVQVAAHKNDVNLTETSALRKVTPENNSSQSAVVHAGEQATRDEAKACGEASRPEPASNGMNTKWLEIGGGIAGGGVVLCLILCRGSKPPSVSPSDP
Ga0187871_100011705	F004095	AGGAG	MSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVPPAAQASAANNNKEKVA
Ga0187871_100011706	F002101	AGAAGG	MTTPVPILPQPNPESIPAKKRRVLLLDSSQTKRDLRADVMRKLGIEVDCAADVIEARCWWRADLYNLVLINVAGETDSRDKFCTDLRSASPPQRIAFFVGGPEYLAAAPHSDNAPAELDADALHKQMVAALLAQASAASSQQRWGILEACRKISSVRALSEAKSRAIRETPRPSRWAEAIEQHSPPEAVIPQPLFAPEIVAAEIVSTEMERTETEREELL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187871_10001170

Overview

Ecosystem & Geography

Associated Families

Sequences