Scaffold Ga0187862_10088428

Overview

Basic Information

• Taxon OID: 3300018040
• Scaffold ID: Ga0187862_10088428
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2168
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_42_13 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038963	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187862_100884282	F038963	AGG	MVDSPKQRTVRTSKAEACVSEMARREADRQARRIPWRRLLEARQQYVEWNAFSLWARAVAEAEGCTPAWLVKVLEERCPGLLGSDRTSEITHEDPLLYRRVLEWFESKVLAQAKHEGWLPAVTFYAVRDPAFVRDCAYSQHCEAQWKRQHPSDYPSFEEWRRASEQCADEVLDAFEMAEDKRQIVKTSRLVGPERFASAVAQYMEWEAFTYWLRSLLESDGKFPDAVVKELQGRCPGFLECDEELRNTLSPEDYTRRWKALLEWGENRFFSKMQQEGWIHEVVYEARAHPRSVRIVDYWVFYWDERWSSRPHEVYPSFQEWRCAADGFVVGAGSERAAAV