Scaffold Ga0181579_10105788

Overview

Basic Information

• Taxon OID: 3300018039
• Scaffold ID: Ga0181579_10105788
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1757
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples → uncultured Candidatus Thioglobus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016495	Metagenome / Metatranscriptome	246	Y
F020847	Metagenome / Metatranscriptome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181579_101057883	F016495	N/A	MKILNNFAIFLIASFFAISTSQAKSKSEWYKTFDNESATFYVDTYMLIYENGYRMFWLVEDLKKPFLEKYNSILKYKFLDCKGNRSKTFQSFAYKQKMAEGRESLKLPNDASWLDNTKDLSMLSSSNQICNDPYLLSKTRGLK
Ga0181579_101057884	F020847	N/A	MQKKWLVLLLFLSGLVSSNQNANFDHEIKVNIKDIRSDFNEKNENFFLTILNGIKGQRDNYYSFDSLNDIKVKPPEGFIVDKKNNSEFTYSQQETKILSFCSKKITLTLDPSDEYFITLKHLDKEILGADKSEYPLYENTNLAIYKKDEKTLKGYLLLQGKVIIAMFEVCNDRSLDKDIFTLIDWLKNIRNENTK