Scaffold Ga0181600_10037521

Overview

Basic Information

• Taxon OID: 3300018036
• Scaffold ID: Ga0181600_10037521
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3224
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019474	Metagenome	229	Y
F032261	Metagenome	180	N
F033409	Metagenome / Metatranscriptome	177	N
F035746	Metagenome	171	N
F088815	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_100375211	F035746	N/A	EHKHDFNKLKHVATKYYNETNCCTVIAVAVAANVGFGKAYHAMKREGRKDRRGACFSQYARALSKLGYTVEKRNLYMGKTLVAAKRLCPKKGTFLLDSGNHVTCIRDGEMVDWAADNNSRKRIRNIHEVVKS
Ga0181600_1003752110	F032261	AGGAG	MAIKMDTEADYVLEAYWWSHKVVHNVVKKHKKFVLAYVTAYRDYESEESERLHLTEMLQLRDKLIELYRCHPDGEVCVELTIRQEFVNV
Ga0181600_100375214	F019474	GAGG	MNIVFEADTYKVPAFALPALVNGDYTGIMDDDEAFVDNLCEWLNGQYGEGLWHIGEVGEQYFGRADFENLLGDVRDVEIVYKLVEEV
Ga0181600_100375216	F088815	AGGAG	MKKPRLTRVEVLDLFMLLLEFKETESSLSEDDNDVLLCALDVLNTAQRERMIAEEDFLHDRSRG
Ga0181600_100375218	F033409	AGGAG	MSLGFLYTDKTKRYTIWESVPKAEWLPKGGLSWTNRGTFKAANAYSAIEQAAHGGYYVKAGDKITNSAGPEIIIKTEGTV