Scaffold Ga0181600

Basic Information
Taxon OID	3300018036 Open in IMG/M
Scaffold ID	Ga0181600_10023371 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4307
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4307

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021972	Metagenome / Metatranscriptome	216	N
F025730	Metagenome / Metatranscriptome	200	N
F043373	Metagenome / Metatranscriptome	156	N
F049007	Metagenome / Metatranscriptome	147	N
F073488	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_100233711	F043373	N/A	SFDHITDNYSRTLLLDVYQAMFKSNSWDALKSHDDKMGFQYTDEAKPLLDNMNLLDLHSGTSMAWVMSHMKKIAKFGYVGYVKDFMKLNPSDER
Ga0181600_1002337110	F049007	N/A	MPACFPNMQPLVIDHNPFVFVKPKTSDNQFATSHVTPDTKFMCNTYTNRPTQMLARAPGGTAVRSSDSLTKVYLYSIQRP
Ga0181600_100233712	F021972	N/A	MNDEFKRLWALLICQIWAKYHLGRTRQHNWSRPTDEEFESGYLFGHYLMVGGDAFRTWLDVQRWGENKELTEYQCSFFEYIKEMVDDIYPDVDRSELGMALIYGEETREDVATILNLMPSSFLTSLYDSQPSVHEALESGD
Ga0181600_100233713	F073488	N/A	MDFEEFHIRDVMKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYQRIVHIKNEFKHRYCDKFQYSN
Ga0181600_100233715	F025730	N/A	MITRVMLAAVLFYVVSNPATYKLVESLLGRFFKIATNGSPTAIGLLVHTAVFAALFYLLAPMVSGLDAKEYRSLIDAKLSDTKNRNENFDDVLMTPLKVTTAEEETEAVKKGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181600_10023371

Overview

Ecosystem & Geography

Associated Families

Sequences