NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181600_10023371

Scaffold Ga0181600_10023371


Overview

Basic Information
Taxon OID3300018036 Open in IMG/M
Scaffold IDGa0181600_10023371 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4307
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021972Metagenome / Metatranscriptome216N
F025730Metagenome / Metatranscriptome200N
F043373Metagenome / Metatranscriptome156N
F049007Metagenome / Metatranscriptome147N
F073488Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181600_100233711F043373N/ASFDHITDNYSRTLLLDVYQAMFKSNSWDALKSHDDKMGFQYTDEAKPLLDNMNLLDLHSGTSMAWVMSHMKKIAKFGYVGYVKDFMKLNPSDER
Ga0181600_1002337110F049007N/AMPACFPNMQPLVIDHNPFVFVKPKTSDNQFATSHVTPDTKFMCNTYTNRPTQMLARAPGGTAVRSSDSLTKVYLYSIQRP
Ga0181600_100233712F021972N/AMNDEFKRLWALLICQIWAKYHLGRTRQHNWSRPTDEEFESGYLFGHYLMVGGDAFRTWLDVQRWGENKELTEYQCSFFEYIKEMVDDIYPDVDRSELGMALIYGEETREDVATILNLMPSSFLTSLYDSQPSVHEALESGD
Ga0181600_100233713F073488N/AMDFEEFHIRDVMKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYQRIVHIKNEFKHRYCDKFQYSN
Ga0181600_100233715F025730N/AMITRVMLAAVLFYVVSNPATYKLVESLLGRFFKIATNGSPTAIGLLVHTAVFAALFYLLAPMVSGLDAKEYRSLIDAKLSDTKNRNENFDDVLMTPLKVTTAEEETEAVKKGE

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