Basic Information | |
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Taxon OID | 3300018036 Open in IMG/M |
Scaffold ID | Ga0181600_10023371 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4307 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021972 | Metagenome / Metatranscriptome | 216 | N |
F025730 | Metagenome / Metatranscriptome | 200 | N |
F043373 | Metagenome / Metatranscriptome | 156 | N |
F049007 | Metagenome / Metatranscriptome | 147 | N |
F073488 | Metagenome / Metatranscriptome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181600_100233711 | F043373 | N/A | SFDHITDNYSRTLLLDVYQAMFKSNSWDALKSHDDKMGFQYTDEAKPLLDNMNLLDLHSGTSMAWVMSHMKKIAKFGYVGYVKDFMKLNPSDER |
Ga0181600_1002337110 | F049007 | N/A | MPACFPNMQPLVIDHNPFVFVKPKTSDNQFATSHVTPDTKFMCNTYTNRPTQMLARAPGGTAVRSSDSLTKVYLYSIQRP |
Ga0181600_100233712 | F021972 | N/A | MNDEFKRLWALLICQIWAKYHLGRTRQHNWSRPTDEEFESGYLFGHYLMVGGDAFRTWLDVQRWGENKELTEYQCSFFEYIKEMVDDIYPDVDRSELGMALIYGEETREDVATILNLMPSSFLTSLYDSQPSVHEALESGD |
Ga0181600_100233713 | F073488 | N/A | MDFEEFHIRDVMKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYQRIVHIKNEFKHRYCDKFQYSN |
Ga0181600_100233715 | F025730 | N/A | MITRVMLAAVLFYVVSNPATYKLVESLLGRFFKIATNGSPTAIGLLVHTAVFAALFYLLAPMVSGLDAKEYRSLIDAKLSDTKNRNENFDDVLMTPLKVTTAEEETEAVKKGE |
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