Scaffold Ga0181600_10010797

Overview

Basic Information

• Taxon OID: 3300018036
• Scaffold ID: Ga0181600_10010797
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6637
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015991	Metagenome / Metatranscriptome	250	N
F099221	Metagenome / Metatranscriptome	103	N
F101072	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_1001079710	F099221	N/A	MQDLSLSQKVKVALAVAPTVLMFGPIPIILVSGGSIMRQIVKHKVPR
Ga0181600_1001079712	F015991	N/A	MAFLPFLRHGDLYDLLDTTSKVLNELPNLEKQFNTKIADRYLYKRTHTTDDGFEIEMHLPGVGKDNIHITISSDDHEVTVAYGENRSASFDLPSYVDVSDEGYKASYIDGVLRLFFKMRTSDKKRREIRLD
Ga0181600_100107972	F101072	N/A	MNMKMPKLSQQAMIVAFAAVLPVLASAYKLRILDAAVLTLSGALAVYNVNCLTAGSCNTWATIVSISFFVMTIMQLMAPREGLEGDEMPKEEVLVADAKEVTQVPAKDEEKPAATAEPAPTEAKMPAEAKPEKAVVKSAPLVTTDEEFEMLKAQLMG