Scaffold Ga0187875_10124905

Overview

Basic Information

• Taxon OID: 3300018035
• Scaffold ID: Ga0187875_10124905
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1450
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F015781	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187875_101249051	F015781	AGG	MNSVVDTIVAAPASSEAQLPSRVLEIRPEESKLVCVGAEGREFALSRIVGSNVRIGDEVL
Ga0187875_101249052	F004122	N/A	MTEKGLSDSGCRSAELRYEWQSFLGLLPVLDLRPTDLVLYQRCQTAVWRSRKSAISRTDLQQAAGLGFQAEALGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRNVDLEGEAKCNQ