NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187875_10083003

Scaffold Ga0187875_10083003


Overview

Basic Information
Taxon OID3300018035 Open in IMG/M
Scaffold IDGa0187875_10083003 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1836
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016695Metagenome / Metatranscriptome245Y
F067682Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0187875_100830033F016695GAGGMTAPGQPMHHNQILAVLRQHGFAEGRLIAFSKSGYRKYYRGHFVVFNAQIFSRRGRVLKTADLDLTLDAEKLNAAARVVGENFFVLEENSPNPFWQPGSTPISRILRDAVWWTRIHPRDEDLFLPLDAGPLRRKRVRLNCSTGRWQNRPAYSVDLWNNPEWESGRNLSGAVVQVLGHSPKGLRPTEKNEVFTAEISKTRGRPVRPVFYHHVGLLEYVWFSHFAAVPAILYDHTVRLLDSVSFTRHRDSAAIHLRQAGEVVGLCWPCYISAPEVLANARRQLNRRFGKNTETGENRR
Ga0187875_100830034F067682N/AREWDAVFAMRVYPELLEKYTAPDIADDEGYYLVGALVLEIDAALDGRRPSRLVSYGKFLAIDFTFLAQSRRTSSEEVLNLRAVLGPCDGSHPFVCVVRQDSPF
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