Scaffold Ga0187875_10021488

Overview

Basic Information

• Taxon OID: 3300018035
• Scaffold ID: Ga0187875_10021488
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3921
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046150	Metagenome	151	N
F050107	Metagenome	145	N
F053027	Metagenome	141	N
F059592	Metagenome	133	N
F066389	Metagenome	126	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187875_100214882	F053027	N/A	MTTLTEREIELHLKCPMFGVGLHQPAPFECAQKLLRWAVLDAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMNNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA
Ga0187875_100214884	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAITRRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATNGDEETSEEEQSPEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGGQ
Ga0187875_100214885	F059592	AGGGGG	VPKHQLASRSVNVEFLTGLELVSTKIFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGDEVVYYEHIATVRHKATNKFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVSIMRSHEDWLAHIADVGTFDTLAYFLAQNNVIDEKALATLR
Ga0187875_100214886	F102366	AGG	MAGPVSIERRSAAMTMVLMHLRMPTSDVARFEVTFTGNSDCFVARIDFPAHYGGGYQIFEGILGYKVSPSSSVMGKNRVTPRFPLRSTIPPQTAEDLREEERQLRMRLDYGETFNNDRVS
Ga0187875_100214887	F066389	AGG	MPPTEDLNLSVGTEITATDVPYGSSYTNGHLYGAQAMGNILSGDLQNPDSAPLAQAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLSVDPARAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDEPKPVIVPEEDLFEDRTW
Ga0187875_100214889	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFKPLEIQHLVSILEALAPANSLTKDMKELHESMKRRFNNLPLKNRPRLLATGEWVITLAWYKADIEEVLTLLLEAKSGKSQTVESLAEQQKAQGKELFEV