Scaffold Ga0187863_10143299

Overview

Basic Information

• Taxon OID: 3300018034
• Scaffold ID: Ga0187863_10143299
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1334
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F004392	Metagenome / Metatranscriptome	440	N
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187863_101432991	F066496	AGGAG	MAEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWT
Ga0187863_101432992	F004392	AGGA	MPVNGPETIADSKTSQPVPSEARSGRAAKNAKPAVGRGASTRHRRDRQDGSETNGEERFFLASANRSGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS
Ga0187863_101432993	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQAKEGPEGSTNAKAKWFDRYDVLMILTVIAVYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIDRRRKDRKAETHDGRSHMDAAEKQEIARKETVERCQ