Scaffold Ga0187863_10002893

Overview

Basic Information

• Taxon OID: 3300018034
• Scaffold ID: Ga0187863_10002893
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12882
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F004586	Metagenome / Metatranscriptome	432	Y
F016510	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187863_1000289313	F000272	AGGAGG	MSQTVAERTAEHVSESAHQASCATSAIADALEDGVRVVRRAAKQGGDAAEEILNDTTERMQRNPLLTVATSFAVGITAGTLIGWMLRRR
Ga0187863_1000289315	F004586	AGGAG	MTTTGQNKCAHLPCRCTTQANDKYCGQACKDAGSKEVDIACQCDHEVCPLTV
Ga0187863_100028936	F016510	N/A	VKTKELTPKQILSVPCNTCGAAIGEVCELHTGTPRTEPHRDRKLSAAEAVEKAIGKN