Scaffold Ga0187867_10022199

Overview

Basic Information

• Taxon OID: 3300018033
• Scaffold ID: Ga0187867_10022199
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F051827	Metagenome	143	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N
F078490	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187867_100221991	F078490	N/A	QRLTRVEVEKCEFNGQQLRFITGRTRDRAGSRKLARLTFLPLPAGTYEKRIPREITRLLI
Ga0187867_100221992	F051827	N/A	VKSQVYLVQDCGGVSLEVVAGPFDSEAAAELEEAIIQRVKADSGLRDGGDDTLHTLEIAPERKPEFGGFSGGYMENIRWVAAGRPSPGKPDTWDQPDFSLTTKEKRK
Ga0187867_100221994	F038201	GGCGG	MDVFTRNVQYMTSQVAGEHAARTFQMLQATFPGLRNFDQLRTFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHALDPEACAPAAVGMFPLDLS
Ga0187867_100221995	F045645	N/A	MGQDLHECGTEDLDMKLQETMLTVLKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDVKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM
Ga0187867_100221996	F063278	N/A	MKERYLIIGFEPPTRRISLDSEWAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERAFRASQTAPPQFRTAGPQRQPFLVISYDPVTEAVHLDPELNDSSDAALRSVAGIRGRAHVILAFMPEQLREIAANLEGLTAEQMARNRRAAEQEEKTFYAELVERQ
Ga0187867_100221997	F063304	N/A	QRLAQQGTPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDINKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPGNAYSAFAQRTALIGIQPHEWAKRWVESQRDLFRNKPSDAGYLRLAQRLSGAWPLEPGKGDAFQRALASFLDGIAASTSQSHAVVVQSSLLETFARAIRHQARDLGLDRPAAPSPAMSIN