Scaffold Ga0184634_10048578

Overview

Basic Information

• Taxon OID: 3300018031
• Scaffold ID: Ga0184634_10048578
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184634_100485782	F051769	N/A	MNACAASGRVAAAVLLAMGGLGLGLFLLGGRRATPLPVVRCPIHGIAYDAELEVCPDCAKTDAAGGKGGAR
Ga0184634_100485783	F095084	GGAGG	MSGMPALYCRTCNTFREIEDWRERGEALVIALEPCGNKIRRRAGIEWPIHTVAA
Ga0184634_100485784	F013143	AGGAG	MLSRFVLGAIVGGIAVYLWGDEIRRFANTKSRTARLAAADTLKAVQSTAEEMFDSAKDQVTSTLQSGQDAIRPARANRDR