NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184608_10160507

Scaffold Ga0184608_10160507


Overview

Basic Information
Taxon OID3300018028 Open in IMG/M
Scaffold IDGa0184608_10160507 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)973
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000938Metagenome827Y
F044957Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0184608_101605071F000938AGGAGVARRSTWLIDMGDGTWAVSCMACRIALYRGLKPGAERAARRHYCEPVLPLGRRRPA
Ga0184608_101605073F044957GGGGGMRGRIAVHLYPGLGWTAPLFVAGCGDCGTELARSTDPAAAKRAACRRRCPACGTRAAGRLPGTTSLNTDLARTRGRREFASRRRTPERHSAPRSQHAGRR

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