Scaffold Ga0184608_10000058

Overview

Basic Information

• Taxon OID: 3300018028
• Scaffold ID: Ga0184608_10000058
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22774
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005778	Metagenome / Metatranscriptome	390	Y
F031014	Metagenome	183	Y
F090796	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184608_1000005816	F031014	AGGAG	VVLTMTGRLLLRVRSAALVLALVALAGCDVRIPSSGGSVSLPTEFPTDFPIPPSSTLVLATGPLPFLPADMRGMTAQWSSTLTRAELESFYGKPHAAWKLYGAPITGPSAGPVSLGTLFVLRHDGDGIAASVSVGASNMIDNGILVQATIIPARALPSPP
Ga0184608_1000005826	F005778	N/A	MQVSQVAYDRFVLELPPADATWRPLADPECLAETAAWLWDFGPKPLIAVIGVDKAAPSWLTSWKSRGVRFAPGGASTGVAVILANRTDLERFLSEGAPHERTVLLWPRTSEVKTFEALNGAANEWLKTVDGHATIQRGGEVYEVHSVVA
Ga0184608_1000005827	F090796	GAGG	VRNLVTALVVVVACVAGLWLTSVDARTDDTGVEAGLLFLISAALAAVRPRGAIIIAFIVGAPIPVAEALRTGNFPLGIVALGFSVAGALVGAYLGIIARRSTSSTSA