Scaffold Ga0184605

Basic Information
Taxon OID	3300018027 Open in IMG/M
Scaffold ID	Ga0184605_10000669 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018027 Open in IMG/M

Scaffold ID

Ga0184605_10000669 Open in IMG/M

Source Dataset Name

Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10415
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10415

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9195

Long. (^o)

-106.9496

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015803	Metagenome / Metatranscriptome	252	Y
F049720	Metagenome / Metatranscriptome	146	N
F054173	Metagenome / Metatranscriptome	140	N
F097682	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184605_1000066914	F049720	AGG	MLTGDYEKGVRAAMTITNASSSFTGSKSGRTLKFTPQAIEKIKELVAQGVSREEIAKQLDVTVGSLQVTCSRLGISLRRLGIHKAPTRAALDSNGRTVPPFRWLAGTQLQAVEKGQQSSARFAITVRRKGVEGAVDLPLSQQAIERLGIEAAFRDMGLVELMAQVVGGAVKKDVVEQILNEEAPLRY
Ga0184605_1000066915	F054173	N/A	MQEYAFQVKLVAIVRVRAADEALARKVVPAVLGSPGTVEIRLANESNTSLGLNATVTNVDFSADGHSAMLLQRNEKKVKRRRR
Ga0184605_1000066918	F097682	GGAG	MPSCLSFLCDAMNPQQVCFDLQHGATTMIGPTMSQTENVRVSPKRRATKFAPENVQKIKDCVAQGLGREEIAKLLDVTVGSLQVTCSRLGISLRRPHMRYPSYDRLKTQLQLRMVEKGSRPQGKFAITTHRKDNVRAVDVPLSVEAIGQLGLYASLRDMGLVELIAQVLGEAVKKDLVGKILDDISPKP
Ga0184605_100006696	F015803	GAGG	MTLQISAAPRGRTATIFTPANIQKIKEWVAEGISREEIAKSLGVTLGSLQVTCSRLGISLRKRDVLNASGPGTPRTVRRPYLPSHPPIAGQRHAGTGFQITLERNGTRRTTELPLTSSTIGQLKLEAEMRKLSMGQLLAEVATMAIKKGMIEAILHEPAPERAPPFQPENS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0184605_10000669

Overview

Ecosystem & Geography

Associated Families

Sequences