NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187857_10015262

Scaffold Ga0187857_10015262


Overview

Basic Information
Taxon OID3300018026 Open in IMG/M
Scaffold IDGa0187857_10015262 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4502
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065339Metagenome / Metatranscriptome127N
F074279Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0187857_100152623F074279GGAGMKRIRCVSLLTTSEVQPSRIAEILLRRECTAALEALLGDGDEKAQERWSKQSVPKILNVADKILRDAIDRSLPVTGLRLAEMRESVAWAADSNALAGRVLEVVSRQCIERVYAEAVERIARRRTLPLAELSLALVPFTDSYTPEKLLARECWCGCWVEDGVSKCSFCGGPAPGGRPTRVWRRVAYGSVQLDVLNETRHNLEERMEKLREMGAQVPSGADPEDYLRQLEWDAPEGEETHER
Ga0187857_100152625F065339GAGGMDPIRVWFSLISGEAATPVNLVVEEWPQSGPAFLHPDILAVAAPDFKETIDLAYRQTLFTLGWPDSATFRIGIESIDPLAFPLPYGFEGDSHFGAVAVGLAQAVARTYPDHFRAGAKHLLPVLQAVSLERVAVAAALDSKKGDFKPVGCIRTKLDSFCMLEVSRPAVCVISPTQNLTVDSGPLLDVPLLNDPDPYVSVNGHQ
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