NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187889_10078525

Scaffold Ga0187889_10078525


Overview

Basic Information
Taxon OID3300018023 Open in IMG/M
Scaffold IDGa0187889_10078525 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1680
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038201Metagenome / Metatranscriptome166N
F045645Metagenome152N
F063278Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0187889_100785251F063278N/AMKERYLIIGFQPPTRRISLDSERAESATDAMRAVAGMRKAADVLLAWTAGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRAGQTAPPPVRTAGPQRQPFLVISYNPHTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRRAAEQEEKT
Ga0187889_100785252F045645N/AMGQGLYKYGTEDLNMKLQETTLAALKSVAGVYAVRPIIRGKALALRQGRDGPELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM
Ga0187889_100785253F038201N/AMDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRAFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHKGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDNGHTLDPEACAPKAVGMFPLDLS

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