Scaffold Ga0187889_10078525

Overview

Basic Information

• Taxon OID: 3300018023
• Scaffold ID: Ga0187889_10078525
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1680
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063278	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187889_100785251	F063278	N/A	MKERYLIIGFQPPTRRISLDSERAESATDAMRAVAGMRKAADVLLAWTAGQMRQMADLLTAMTPQQIAFNRRSAELEERAFRAGQTAPPPVRTAGPQRQPFLVISYNPHTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRRAAEQEEKT
Ga0187889_100785252	F045645	N/A	MGQGLYKYGTEDLNMKLQETTLAALKSVAGVYAVRPIIRGKALALRQGRDGPELAQDEGQAVRVVAVSDAKPSLLSFAAINGIPVKNYTDMAVPKPKAPSAPKPAEVPELVM
Ga0187889_100785253	F038201	N/A	MDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRAFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHKGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDNGHTLDPEACAPKAVGMFPLDLS