Scaffold Ga0187864_10048529

Overview

Basic Information

• Taxon OID: 3300018022
• Scaffold ID: Ga0187864_10048529
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2393
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010591	Metagenome / Metatranscriptome	301	Y
F013964	Metagenome	267	Y
F086490	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187864_100485291	F086490	N/A	LNALTSYRHQIQTGDIAIILDSLQELFRERGDAVTPKQLAERMENKMHRHVHYTYATYLCTLLGFVTRNGIEVGDKESRYIVFDPELLAQKRAQYCLIHGEPNVIKNKGLIA
Ga0187864_100485292	F010591	AGG	MNTGKEDIPVMLDCLQELFDEYGDAVTPTLLVERMETRLHKHLPMHVVAHLYTSQGFITKSVIALQKYCIIPNPELLAQKRAEYHKVNKVN
Ga0187864_100485296	F013964	AGGAG	MITDETELIIPAYDPYNPKSYPGDIKPVYYSQTKVKRLITKFKDNPEALHFLRDMLEE