Scaffold Ga0187861_10004737

Overview

Basic Information

• Taxon OID: 3300018020
• Scaffold ID: Ga0187861_10004737
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11237
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F007120	Metagenome	357	Y
F010071	Metagenome / Metatranscriptome	308	Y
F013506	Metagenome	270	Y
F098482	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187861_1000473710	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKAHPRKAVLRWINAHKVVTITLTESVNYSVHGISSPLGVTFALGGTLVNLCMVTFIVPIWCRLSKLESH
Ga0187861_1000473711	F007120	AGTAGG	MKNLIIILSAACAVVAGYFGARYFTRRDLGFTSARKYVQSLAKNLLHTELTAVREAGATSATTTE
Ga0187861_1000473716	F010071	GAGG	MNPLANLALGIGETLVHEGGRLLFGIALGGAKGLLRTPQPLGTRQLALNRALQKKAMDGALLAGPRTEKEYAKFTLKKGLPTDQRPRTLAVENEPHSVDDFNGVIKEGYGKGEKRLIYCGTSVIKVGGSCQLGKINVHEHEA
Ga0187861_100047374	F013506	AGGAGG	VNYQHLHYQFPAEPFQRWHVIEDRSLPHPLRFRHPCKPAEKPDPKVNFGVSELSARLEHAGVEYIRIALGNDAKSFDWAFCMISGALPGVEVPGDGHWYPVIPWVRDDGFYAVGMREPMPFRDACHLFGFDIPAGKPSVPKRIKRDVARGLTSLFGELIETRQLNQWDLLHTVMLADGKTTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVQIGDLIQITGAMPNGQIKANCLIWDIEHDLVVWDVKQELRAWQGQIYLSVLNELHGGPAHLDVKPPPTSIWPRFGITS
Ga0187861_100047375	F098482	N/A	MRDDERVKEEIGFYNPASWADEDGNPVLSENRWKLWRMYAAGLPAMQFRNCRDAFYRTQMESPENSDPDRFRIRFREPQDLMTVKADELAGAAVRRYLFPEPFVFDKQGYPHWERSTLPNVDSVYLGGFDGEFISLRNPNASHRESGKLRGRRLQRFAGIDRGAVMFVHLGFAASLEGAPGMAKSFNGADFDDSVLALLDPEIVKHWKTLPEYPWVMATPTEVKVIDDGDALFDRHPKVQEYDDYYVTCMLNDAKRGQTGIGYVVNAITWFNLLWLNRESIVAELRRMQPSSQVAAAIHWMEEELPRSRMPMVASRLEEIIDAIKLNGSSINWVSGVITEFRNSCPVAPKFWWQGGYQGQGRIPRDRLENGNAPIPVTTPMDVAREDWIELFQKARWFADKESWKRCWRVPPEIRSFPTRPEAAPAARDFWLFYNRTREAKKAEFLKAGKDHRGKKVTSEQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGLTLEPPRNPDGTVKPVADGILGGPHTLDGLLDISRAAGVARRYVPLTWESERVRADYGDLSLDIIVEDTLVRISGSTSNSTSWIGIVDLPDGQYRVEHGLVVTEDTSEGPPQGPAVALLAVNGFEQRLRDDRLKQEDRQRIEEELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGTSEPLGWISREHLPLVRSELTGVLVSGGQYTLKVLCPIPVQGTHS