Scaffold Ga0187874_10106651

Overview

Basic Information

• Taxon OID: 3300018019
• Scaffold ID: Ga0187874_10106651
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1215
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → unclassified Singulisphaera → Singulisphaera sp. GP187 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006975	Metagenome / Metatranscriptome	360	Y
F068529	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187874_101066511	F006975	N/A	PKPPTRRVLCYATAKLLRDEAESMVPNIDPEQVRKLTGWGLTQNDRASFVG
Ga0187874_101066512	F068529	N/A	VAIGKPIRPDGHFALLSDHFALLSGHFALLSDQGDRDALENRPSQVSCKHFVVPSTMSPHAHLARSPVGLADKVWLEAVGREPGENSPWYRSHVLAQRPKLASERLIPQEWLNLALSEATAAAVQTLRVGACGRPVLAVTRAKAWAVPRA