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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018019 Open in IMG/M |
| Scaffold ID | Ga0187874_10010867 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5258 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002761 | Metagenome / Metatranscriptome | 531 | Y |
| F005112 | Metagenome / Metatranscriptome | 411 | Y |
| F007120 | Metagenome | 357 | Y |
| F016631 | Metagenome | 245 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187874_100108671 | F016631 | GAGG | MNRLANLVLSVGETLVHEAGRLLFGIALGRAKELLGTPQPLGSRQLALNRALQNKAVDGALLAGPRTQREYANFTLKKGLPTDQRPRTLAVENESHSVDDFSGVIEEGYGKGDKRLIYSGTGVISVGGSCQLGKINVHEHDAEKAGFHYDFVAEGIDPHTESFEVNIANGVLKGRYAFRQAFEKNRYLVIRLKDDSVLVAKPDIHLKPPEFLKTLSDSTRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGEPYYDKLPAIEDLRNRSPVWLARRLFPGPEQEGTVLRGELHHPDGAARVGGILNALPEKSIRIQQERGPVEFYAWDIAKFKGRDVSQMPYGQRRELYAAVIAEIRLFNRHLHVVPAMPEGGDPVEFYRAITHDPRGLPFSEGVV |
| Ga0187874_100108673 | F005112 | AGGAG | MSLVTRYRLFWAALTAALLGLAFWKNSRSYPLKSPLWRLGKAAIDTGVVVLMVTYAPALLLMYVVIWLTSPFRNKIVQVSAAFASVLAITHLAGVVFEAVAVLGVFAADLLSGQVVARMDKRERNTLAKAA |
| Ga0187874_100108674 | F007120 | AGGAGG | MKTLIIVLCAACAVVAYYFGLRYFSGRDLGFTPARKYVRNLAANLLHTEVTAAREAGATSATTTEQAA |
| Ga0187874_100108675 | F002761 | AGGAGG | MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGVKKANPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPPGVTFALGGTLVNLLMVIFIVPIWCRLSNLESH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |