NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187872_10040739

Scaffold Ga0187872_10040739


Overview

Basic Information
Taxon OID3300018017 Open in IMG/M
Scaffold IDGa0187872_10040739 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2537
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001128Metagenome / Metatranscriptome769Y
F012080Metagenome / Metatranscriptome284Y
F025102Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0187872_100407392F025102AGGAGMNRTAEIVLTVLALAGMYCAIPKMFAPVAPTIAEQMALVADGSDPMPLCRGQRCK
Ga0187872_100407394F001128AGGMRPTAKQAGAGANWPPEEGEIINFRSLSGLTKGIVKEVRWGLVWRDFILDDGRVIPEHKIVDHPEPPVWRKAEEVTQDEREACERRLVSMAEEGLDPRDQEQSFWAELNQYLAYTYLRFKQAGLKPPDPK
Ga0187872_100407395F012080GGAGVTRPDEESEKERIWRVLSEAGLIDIPPDEFAKRIKEAKHVVMGRLSELLEQPTDIQEREAAAYSLATLKELERTVSRGGRRTSD

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