Scaffold Ga0187872

Basic Information
Taxon OID	3300018017 Open in IMG/M
Scaffold ID	Ga0187872_10013512 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4960
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4960

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187872_100135123	F047844	GAGG	MRSLLSVRGVLAAAATVTCLGAALWAQDPENPNSLGDVARQTRAQHASAPEDKSSKAQSLVDEMQQEQEAAENAPTGFKSYNAGDYRLLVPFPFSLEGRDNGGAVLLGSRLGITNTEVLAGTPNPIPANLSDNELFNLARGLAGQHGQTPYCSAIKLGQRKAFRCGWNGSPYLLGHEVWGSMAFVVGSNSLIPVMCVSPDEFQCLGYDKFGYHTCNNRNPSWDEVQKTRAAINTRFRDEVTTGQMCDQIIYPSIQLKEDIVVHPASIPEGKTPVARVSVPQDRSLESSEPQTPSLAELARQTRQAPHDKAQATLDNAEGSSAPRGFQSFSLQFCLNPQQCSEASIDIPEKAEVVSRVNGQHIFKAALDGEWVMLYAGPADVNAPYRSLTDPDYIRIRDLANSNGWSREKPDGVSTQDLTIEGRPALMTRFRYQRDQKRWWIGERVLIENRGAQFLLGCAAPEEHFADAEVLCTTLVNSLRLP
Ga0187872_100135124	F012141	GGAG	MGNRYWFWVLVRLAVGVAIVAWAATYLRPGGGEKEFQKTLDALKQVHTFRVASTATPGTQHNEMLWEVDCNRDLLHYQWQVMDSSRPETGMARDEVHVANLEFDHENDGSWSKPRYAMRGRSAKRYCDDLAQGADSSLLPPIATMIKRAILQKGDKKTVNGVRCREWLVTMKGAPNGLEHDTVCLGLQDHLPYEMTVDWEHSRSSFSDYNSPIQFDVPESVLQSANASTGSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187872_10013512

Overview

Ecosystem & Geography

Associated Families

Sequences