Scaffold Ga0187872_10000008

Overview

Basic Information

• Taxon OID: 3300018017
• Scaffold ID: Ga0187872_10000008
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 274689
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 182 (78.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000585	Metagenome / Metatranscriptome	1007	Y
F057521	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187872_1000000853	F057521	GGAG	MPIKPPPRTISASEGLSFERFSGVSRHAKETVKRLRSYLRGRHSVDPKSLVADAQTLTIREWNAALTEKPNTRKLVYLEPWSLEQRSYSREDPFETVYGRELLSRLVAEIPPEQVPYLDAFLAGEKPKEIAQRLGISAKAASARMRRFKAKVADLYAALPNKLGVMPTRDEA
Ga0187872_1000000855	F000585	GGA	MIKAHHLRETEIALGAESREQAETERKNVTSDHLAVTVTEFIEWRAFSYWLRLIVDNVGFVPDEVAEMLQERCPGFLEYAVAYARQHPNEQEFLWLRFLEWTDENLFQAPIAERWRHVLGYDATRDPRMDQLRTYWKQCRETWKLQLPARLPSFESWRASAFQIH