NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187880_1078693

Scaffold Ga0187880_1078693


Overview

Basic Information
Taxon OID3300018016 Open in IMG/M
Scaffold IDGa0187880_1078693 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F016631Metagenome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0187880_10786931F005112N/AMSVVVKYKLFWAACIAALCGLAFWKNSKSYPGKSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAMDLLTGQVVARMERRNRRELAKAA
Ga0187880_10786932F016631GAGGMNPLTNLALSVGETLFHEAGRLLFGIALGAARQLLGTPQSVGTRNMAFPRALQKKTADGALLAGPRTEKEYAKFALKKGLPTEGRPRALAVENAPHSVDGFNGVIEEGYGKGEKRLLYAGTGVIKVGNSSRLGKINVHAHDAEKAGPHYDFVAEGVDPHTQSFEVNIPNGALKGRYAFRQAFEKGQYLVLRMKDNSTLVEKPDIHLKPQEFLNTISRSGRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGEPYYDKLPAIEDVSNHSPVWLARKLFPGPEQEGTVLRGELHHPDGAARVGGILNALPEKSIRIQQERGPVEFYAWDIAKFKGRDVSQMPYGQRRELYDGVIEEIRLFNKHFHVAPAMPEDGDPVKFYHAVIHDPRGLPYSEGVVVKYKDHWFKVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.