NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187866_1109151

Scaffold Ga0187866_1109151


Overview

Basic Information
Taxon OID3300018015 Open in IMG/M
Scaffold IDGa0187866_1109151 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040434Metagenome / Metatranscriptome161Y
F085022Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0187866_11091511F040434N/AKSRLWRLGKAVIDTGLVALMVIYAPALLLMYVVIWLTSPFRNKIVQVSAAFASILAITHLAGIVFEAVAVLGVFAVDLLTGQVVARMDRRERNKLAKVA
Ga0187866_11091512F085022GGAGGMRMNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKNDQAHKR

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