Scaffold Ga0187888_1022226

Overview

Basic Information

• Taxon OID: 3300018008
• Scaffold ID: Ga0187888_1022226
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3302
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187888_10222265	F013913	AGGAGG	MQVTPTMRGMFLAGIGLWVLVWALLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLTNVLVIYVLLPMLDRAKRSAKALNLQF
Ga0187888_10222266	F025336	GGAGG	MALIALIAAAEAMLYSASRSKRGQSRRQQVLMGHSMDSVRALPLVDRYLKRKTAGASKVQTFVASKLAEVCRRAVHTRSFEYLVLHLIRTAIKRRSKYLNSQRRVTICK
Ga0187888_10222267	F014639	AGGAG	MSEITQFTTTPVSMETGFLKRKWKWILFFLEKRAFESKLEGILRAAAGHEGNSLPVGNSHYQLLSTEADSLCTQFADRWGLDVDLLRARIPGLAKLAGLSVPPPTKNYARLACFGMLAIPVALFFTGAMAGLVSVGFHLVGGR