Scaffold Ga0187805

Basic Information
Taxon OID	3300018007 Open in IMG/M
Scaffold ID	Ga0187805_10008484 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4256
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome

267

Metagenome

261

Metagenome

202

Metagenome

139

Protein ID	Family	RBS	Sequence
Ga0187805_100084842	F054526	AGGA	MSNSQEPSSAPELIEQVISSGLFSFNDEPHFSWQGCEHCADGLGATVYDLEGCRSLEDTESFNFQVCGACINRLYYGTEEN
Ga0187805_100084843	F013913	AGGAGG	MQVTPSMRGSFFAGIGLWVLVWALLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELFNYAHTGLDPLGVTFALGGTLTNLLVIYILIPMLDRAKRGGKALDLQF
Ga0187805_100084844	F025336	GGAGG	MALIALIATAEAMLYSASRSKRGHARRQQVLMGNNLDSVRTLPLVDDYLKRKTAGASRLQAFIASKLADICRRAVHTRSFELALLHAIRTVIKRRSKYLNIQRRVTLCK
Ga0187805_100084845	F014639	AGGAG	MSEITQSAHAPVSMETGFLNRQWKSIRFFFEKRAFESKLEGILRAAAGHEGNSLPPGEHQYQLLNVEADSFCTEFADRWGLDPDLLRARIPGLAKLVGLSVPPPTKNYGRLACFAIVAIPLALFLIGAMAGLVSVGFHLVGGR

Protein ID

Family

RBS

Sequence

Ga0187805_100084842

AGGA

MSNSQEPSSAPELIEQVISSGLFSFNDEPHFSWQGCEHCADGLGATVYDLEGCRSLEDTESFNFQVCGACINRLYYGTEEN

Ga0187805_100084843

AGGAGG

MQVTPSMRGSFFAGIGLWVLVWALLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELFNYAHTGLDPLGVTFALGGTLTNLLVIYILIPMLDRAKRGGKALDLQF

Ga0187805_100084844

GGAGG

MALIALIATAEAMLYSASRSKRGHARRQQVLMGNNLDSVRTLPLVDDYLKRKTAGASRLQAFIASKLADICRRAVHTRSFELALLHAIRTVIKRRSKYLNIQRRVTLCK

Ga0187805_100084845

AGGAG

MSEITQSAHAPVSMETGFLNRQWKSIRFFFEKRAFESKLEGILRAAAGHEGNSLPPGEHQYQLLNVEADSFCTEFADRWGLDPDLLRARIPGLAKLVGLSVPPPTKNYGRLACFAIVAIPLALFLIGAMAGLVSVGFHLVGGR

NMPFamsDB