Scaffold Ga0187876_1000015

Overview

Basic Information

• Taxon OID: 3300018003
• Scaffold ID: Ga0187876_1000015
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 153788
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (91.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002289	Metagenome / Metatranscriptome	574	Y
F010884	Metagenome / Metatranscriptome	298	Y
F035732	Metagenome	171	Y
F091898	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187876_100001543	F091898	AGGA	VGFMFMGRVNGINQYKHGITRTYLYLDDAGNCYMKAEKGGYVPGNWGVELGKMEACLARLAASLATPYDEEFIVRKRNALHQQGISLLTIEVQPQDINIH
Ga0187876_100001556	F010884	AGGAGG	MVKQRFRVLFRRWFFTVAKVCGPILLFELFVLVRQHFQYVPLSISDLLMGALLAFLLTAVLCWLWALGEWLWSRLRRSRGFLSGLRQCSRSYWNPDAVRTNKA
Ga0187876_100001570	F002289	AGGA	MFGRMMVEPVVQVDAGVDLQTAVATLIKVAENAEIVRWIELPATVLLFLLVPGDSDSGAVYVLDRKKGIWYVVDFEDEQFGGYSVSQLEMLLKDCNFLDLIERPGLWRAGLPWIVLPETRPEAAV
Ga0187876_100001573	F035732	AGGAG	MHGRLKNYALVICLFVFLFVSIGNGLHLTPGAAFIGALSGTPLVIFAFNRWCDARCRREEARREEPASENIPLRERP