NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184604_10011474

Scaffold Ga0184604_10011474


Overview

Basic Information
Taxon OID3300018000 Open in IMG/M
Scaffold IDGa0184604_10011474 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1889
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030037Metagenome / Metatranscriptome186N
F057256Metagenome136N
F079855Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0184604_100114741F030037GGAMTLTDVLDLLQPILDRWQLVLLALVLVTLLGNPARNLVGALAVALRVPAQFTRTDVEPALRRVAPSAPNRFLRNLRGYFGPVLDRPARALGHAILGLFRTATNAPRWPVAPITDAIVGLVSPLVDQAATHAENGSDRLATQSRSAAAELRGRSGRWAGWRVIGGFLFFGGLCLFLYADAALSIASHEKAIGAPVAFLPDWFREVTLAYSIASFVGALVLGLVFFDLLGMTHLGPWDD
Ga0184604_100114742F057256AGAAGMQSPDRILGISRMTNSARRGPVLALATSLVFAACGALGGPGANATLCPPAALESVTVDTKTFAPVTYAVLIDRAYTGDSKRSPSYPWPQLPRTALETVAAALPKLDLRTGDALVGAWISHNSNDTSEIFLPFSQVNRAPTPELPAAPTAPKLPVNKLECNEYAANVRTFNEAAKVWRAKVTELQQRATLEDQRNVTSFITATTAAMRGAAPTQDPVGTDIYGSLAVASGVFKANPGAHKLLLFSDMTDTIGNPVRPDLAQSDVVVALYHRDDANDQGKGQKDWEATFTTLGARAPVFLAWAATTADKLAEQLKGSAR
Ga0184604_100114743F079855N/ADIGHLVSLQFNESPGGRPISVLVRGTSADVDLKGDRFLRTTLGLKSTLVHTTPF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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