Scaffold Ga0184604_10005534

Overview

Basic Information

• Taxon OID: 3300018000
• Scaffold ID: Ga0184604_10005534
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2354
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051769	Metagenome / Metatranscriptome	143	Y
F052442	Metagenome / Metatranscriptome	142	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184604_100055342	F052442	AGGGGG	MGRKSKTTEEPRIGRKDLQDPDRDTRGPRKGNVESEPERSDREAGAGRPVQLDEEGRSRPAGSDSPRPADDAAVPK
Ga0184604_100055347	F051769	GGA	VNTYAASGRIAAAVVLAMGGLGLGLLLLGSRRSTPIPVARCPIHGIAYDAELEICPDCAKTDAAGGKGGVR
Ga0184604_100055348	F095084	AGGGGG	MRGMPALYCRTCSTFREVEDWRERGEALVIALGPCGHEIRRS