Scaffold Ga0187870_1122147

Overview

Basic Information

• Taxon OID: 3300017998
• Scaffold ID: Ga0187870_1122147
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 980
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F025427	Metagenome / Metatranscriptome	201	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187870_11221471	F039911	AGGAG	MKYTIAVVLAVVAAVAGYFGIRRLTRKDLGFTPLKQYATKLAKTLLHTEATAAQEAGAVPAA
Ga0187870_11221472	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESRLS
Ga0187870_11221473	F025427	AGGAG	MRPGEIEELLASLGTCPIQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEQEMTAYMDETYKKWKEEHDVHSE