Scaffold Ga0184610_1006024

Overview

Basic Information

• Taxon OID: 3300017997
• Scaffold ID: Ga0184610_1006024
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2890
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002381	Metagenome / Metatranscriptome	566	Y
F040038	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184610_10060242	F040038	N/A	VSSPLRLALAVLLLPAGVRAQIVLSGFVTVTRADHRVDAGVGVERAAGVLVGGTTRLRLPHGIAFTVSGETGHLTAVQGTGGIDRDVSQLGAAVEFVPLAWLALESGVMVRSFGTVVARQRWTLVRAGAEARIPLSGETIWAVGRAHLLPVVSVNGLPNAATAFDAGTGLAYRRGRLVLDLTYTVERCDFPWQGSTRRSEQFGTLMIRGGAQILPLSLP
Ga0184610_10060243	F002381	GGAGG	MRGLTLLIATILTLGYGFAAQAAMTADRAETFRRVARSVETSNLLEDANHVWYGGMLAPVTVEAEAQPKCTLT