NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187816_10150877

Scaffold Ga0187816_10150877


Overview

Basic Information
Taxon OID3300017995 Open in IMG/M
Scaffold IDGa0187816_10150877 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015444Metagenome / Metatranscriptome254Y
F025429Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0187816_101508772F015444GGAGGMPANQEIGMRSYVGIVIGLMIIVGIEAILTYQHLSARKLLFSLLCLACVEAFVGIMYLMHVKYETPLLFWTIFPSTLFVLVLLNYIWPDAYRMARMSLLK
Ga0187816_101508773F025429AGGAGVNSAKRTSVRYLKLGLVGPVFLLFISPRNLYAQGCAMCYQNAAASGARIIHALRGGIVILIIPPLLMTGAFARLVYRRRNICNGELVEDQES

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