NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187816_10147323

Scaffold Ga0187816_10147323


Overview

Basic Information
Taxon OID3300017995 Open in IMG/M
Scaffold IDGa0187816_10147323 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005312Metagenome / Metatranscriptome405Y
F009363Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0187816_101473231F005312N/AVCLQQISTNSTKSIDTIVLLPARDSPAILSVMARYSDLLGRRIVVTYRAGDIILPATGNLAADSGKSIFLEESYQQQGNIKTFRWEIPYPYIVELNESPEIPRPSASINEPRDASAESALQQKALEFKNRLA
Ga0187816_101473232F009363GGAGGVAVRICPHCKVEISAPESAARSNDIVCPKCGTRLEVAPGGRTISSLAGLAAGAIAWRLSSGAAGDMGAVLPTLYAFLAFGVVSALVLMFTANLRNAPAVPVPEPAHTSSSAGHGGGGHSGGHH

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