Scaffold Ga0180436_11553038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180436_11553038

Scaffold Ga0180436_11553038

Overview

Basic Information
Taxon OID	3300017990 Open in IMG/M
Scaffold ID	Ga0180436_11553038 Open in IMG/M
Source Dataset Name	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	511
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.3	Long. (^o)	-115.8	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044813	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180436_115530382	F044813	N/A	MADPKAQLLNFTIELNRDGNVEFNLDCVNTIDMERHLRNLGDPAYGPRIGNIVRHYFRHLSEKI

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