NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180436_10472772

Scaffold Ga0180436_10472772


Overview

Basic Information
Taxon OID3300017990 Open in IMG/M
Scaffold IDGa0180436_10472772 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007686Metagenome346N
F090339Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0180436_104727722F090339AGGAGMTKPANGTNVGNAIHELAPGTTWRLDEPGEIANLEWLDDPQLRPSDEAIADKTAELDADPNYPST
Ga0180436_104727724F007686GGAMNIANPSKAMIALVALVCVTILLATNSVDQSAGTGLIGMIAGYAVGNGIAARRGEEVTPIIGK

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