Basic Information | |
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Taxon OID | 3300017989 Open in IMG/M |
Scaffold ID | Ga0180432_10034353 Open in IMG/M |
Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5012 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.4166 | Long. (o) | -115.9166 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041217 | Metagenome / Metatranscriptome | 160 | N |
F059018 | Metagenome / Metatranscriptome | 134 | N |
F070161 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0180432_100343535 | F041217 | GGA | MAPDYSKLPFQLNWVQLVRQEFKGYGTEWKRGDVFDWQQRGIPWQDVMSLFNRGFLMQEAPTEDNQKKVVGDGLDELGPEELKVIVDNINAKVKLNTKTEREYNTKKCKASTITKKQRGHIRTWRNSPWSDWEQA |
Ga0180432_100343537 | F070161 | GAGG | MSFNARDLLKLVQDFGETLTLRKVTTEGTYDADTGTLTGSATTDYSFTGYFYNLAEGTSDLTQTRKGRRACVIPAKGLKATPDDQDQILGNGDTVNITTVRTIFSGGQAVCYLCEVYD |
Ga0180432_100343538 | F059018 | GAGG | MAVPKIKVSPALKKKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSLGKPTGRDPGSERGKALNNLVNDIKKTVEVGSPGGPLKEGIGIQADNYYFINRAPHAKKVDDNPKYRVLNKVIRQHGR |
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