NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10023750

Scaffold Ga0181520_10023750


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10023750 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6812
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024018Metagenome207N
F036061Metagenome170N
F041558Metagenome159N
F042700Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100237503F042700N/AMDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTRTDDRGWLNKLCEIRRCLKMPAEEAFRQARCNGKARFTDAPAAQHSVSWAGPAATR
Ga0181520_100237504F041558AGGAGMSPRKNQSKNPTVKAKPAPAKPTAKTEPVAAPEVVAPQAPKFTAGDLVRKALQLRQQHTLNAPVPTTEVPKGPKPMIVEFKVVLSDGTVLHAEGKHADVMVRFSNECQEICQTQGLAAYNGPPLTHYTAEEWAAKNA
Ga0181520_100237508F024018AGGAGLSAHPTTAIDIAKLLAADNVSTADRIWAVDFEVKMPAELITEEDLKCPDCGVVHDPSLENARVVADTVTVLGGPDAQVSVDRVREYVLNRELEAGLRMTDFVLTGVKLRAAAEVV
Ga0181520_100237509F036061GGAGGVLENSDNPAITQQGVHAVEAPADLFSDPPFGQLFAELTDLAAAAAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKGGKYVALCHRPGTIEGCWDRDVAPMCEYKDHEGIQCDQVAEWRVAFGKDMLMSTHRCLIHVPPALSDVSEHRVFPI
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