Scaffold Ga0181520_10004103

Overview

Basic Information

• Taxon OID: 3300017988
• Scaffold ID: Ga0181520_10004103
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24778
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013851	Metagenome / Metatranscriptome	267	Y
F019608	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181520_1000410312	F019608	GAGG	VRRSILPAVTTILLSAAMLTGASVQRWIHIRVESAKGTSGDVSFNVPIEMASAVLPAIPSDHEHHGKFNIQASINGADLRALLDSVRNSPDNVFITMERHDAEVSVAKSGRFLLIKIVNKPTPEHKTGKTIAIKVPTSVVRAMASGNSEEIDVNAGIHALALEGEVDVTVNSDKETVRVWTDTKTTTD
Ga0181520_1000410315	F013851	GGTGG	MNIGLAQPVHPPLVLKCTDMPEPRVLQLAQDLEWLGCELEYVGHKHALEGFPESGPIWDQFREKQCGVLATADKVERELKNFVRFNPARLVGVEYPIAQALDSITDLLRNAETIKQAAAVAVNELPPLVRNFTKMVEEYLESVDGARR