NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10000825

Scaffold Ga0181520_10000825


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10000825 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66829
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (82.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055686Metagenome138Y
F071902Metagenome / Metatranscriptome121N
F088129Metagenome109N
F098527Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181520_1000082519F088129AGGTGGMNDQLQRPYSRNRDRSVEMLPLRTQSQLSPPTCAVCGSRNVRPFSTIYGRGTTFYTRIKGIILKHGYERTKRQSVLANKCSPPMKLPWSPSVLVLLLYFGAQWGANRWLHFSYLFELAEYYLGWGSLLLAMAAGVNNFGFYPQRMSAWGRSYFCERCGSCTTLER
Ga0181520_1000082537F098527AGGAGMSRYSLNPIKKGSKVDVGYDPLLDSYFLQVRVLNTHGEVHLKLWRGNGLGGFESGGVVSVPETILEEAASYAAVPSDLLEALLSDRNREPELVESEPVVYAGMPNNEVWRHRPSVDPHDGVLITIRPSRVFERCRQLAMVLLRDFLGDETRARRLAKDFSAIVVRGLPENRPWLLTDRDLQEGVCAVETRLGLNWIVEAKCYAGEGPRVTPEAQLHRSGRIKKRPTTSVTTQYPLPASI
Ga0181520_1000082567F055686GGAGMSHVTRTAQIDDIIDELIALYLAQAANLREYGQAAMAGEGTVNLERTLRHREVQRAELYRQFEQAAFPVSEAPNLLDQT
Ga0181520_1000082572F071902AGGLTFILRDRAFTYRRWYIAFMPAKPRWHADLNNIRTSIAALPSPFLDRPAIEQLFGVKRRQANNLMRGLGGYRIGHAAVVGREDLLLKLDQMAGPRGYLAQIERKSRVVETLDALRSEARPRRVSPPPPRRTSSALPAGTRISAPGELTISFTSPEDLLGRVMGLAQSAAGDFATFAAALTQETDRGPAQAPQGFKEP

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