Scaffold Ga0181569_10005234

Overview

Basic Information

• Taxon OID: 3300017986
• Scaffold ID: Ga0181569_10005234
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9949
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059022	Metagenome / Metatranscriptome	134	Y
F088544	Metagenome / Metatranscriptome	109	N
F102788	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181569_100052341	F102788	N/A	TTVVDVKTLNSLNEDEKIEAFAKVNSKDLETLIHYAQVELQERALVEQAYEDDLLGKQTAEERRQWL
Ga0181569_100052344	F059022	N/A	MAHLYSNLNIHMESILNNITIKHEGVNYQLEQMLWAWKQELEVDVNLYAFTHQREMLEEVKRILKEHFGKTSWTQQDTLKQLAEKDML
Ga0181569_100052347	F088544	AGGA	MNKRYPSMYSYYSHEVNKALDLEDHERVGYLIQDMPYDILVALRKEGILPPRPDSDGLESVDNSRERTMIVEQEWTITYTRAKEVVIDRTGSEYEDVNSALRLTEEVTFPTEIGDVLICDIKEDHNAYPKETLGDREYDAIEKTMSKLQPLRTRTNIKWKDVK