Scaffold Ga0187782_10254897

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187782_10254897

Scaffold Ga0187782_10254897

Overview

Basic Information
Taxon OID	3300017975 Open in IMG/M
Scaffold ID	Ga0187782_10254897 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1319
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020887	Metagenome	221	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187782_102548972	F054526	AGGA	MSNSHEHLSTPALIEQVIGSGLFSFDGEPYFSWQGCEHCADGLGAAVYDLRGCRSLEDRELYEFQVCGDCIIRLYYGRRGTYHA
Ga0187782_102548973	F020887	AGGAGG	MRKTITLYGEVAGKIWLPAVECTKAFHLELTRIPRNSKTRTYPGIAPRSMEITCLRDALLHLTNDGDFQSCAITWARLEVSHYFGDETRGTRTVKSRTRVWELRGQGQDADCFAEVRS

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