Scaffold Ga0187782_10109789

Overview

Basic Information

• Taxon OID: 3300017975
• Scaffold ID: Ga0187782_10109789
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064903	Metagenome / Metatranscriptome	128	N
F066496	Metagenome / Metatranscriptome	126	N
F090320	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187782_101097892	F090320	GGAGG	VIDPKTNRNRENAGFRTLSKFGGLDQLDWLMILVSVLIGTLAKQHQFLQLPTGFLEWVFPFLLMMVGYKARGTITEIIESRRARTGSTPDE
Ga0187782_101097893	F064903	GAGG	MRSLFPLSYDRADVLMSAGCSTFISAALILVIPRVGVVLLEILFGLFFIGCALMARARLRRSVQYRERPAKPSDAKAKWFDKYDVLMILAVIAVQIASGRLLRKAGWSEGTVSILPLIMFAAGILLKPRAVEFIGRRRQSQAADAGPRNPAARPEELDRSDRLLGPE
Ga0187782_101097894	F066496	AGGAG	MSEKNQIVVVLIVALSLGAFVDRVTVVKIVAGVALLWTLQN