Scaffold Ga0187780_10032396

Overview

Basic Information

• Taxon OID: 3300017973
• Scaffold ID: Ga0187780_10032396
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3686
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013828	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187780_100323966	F013828	AGGCGG	MGKWRHMVALPFLISLSGCLEITTYVSPAASGTVIDATTKKPIRGATISVGDHPGLFAQTNSDGQFILVPTTRTTHIFWLAPYRSLPPGGTIVVFADGYASKEIVVNGSEQLLVSLVRVR