Scaffold Ga0187781_10019863

Overview

Basic Information

• Taxon OID: 3300017972
• Scaffold ID: Ga0187781_10019863
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4691
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y
F047830	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187781_100198633	F007596	GAGG	MSLRIRFRFDGKCSIHPRYDPARDGRPQHGKCEGCESLYVIYLYTRIAKRKAENCNSILARFSTDRQEVCRTDGSSVVSENETD
Ga0187781_100198634	F000208	GGAG	MAMRIRVTTRAGLYERRKQEHIDRGYRIEEERPIPVNGFCTFVAVRELPVSDALTELVALAVNGNHGAGDDY
Ga0187781_100198635	F002560	AGGAGG	MVVHNPPPSADSARPPVIPLPVALYVSDELIFELYDGGQPRRRFSIRWERLVPAKEYMPQPAPQNPQAGLTHQD
Ga0187781_100198639	F047830	N/A	ESASSPSERTVAENNGNGDGHDSGRGAGGHDASLVREIEQMERALGKRMYRGLLKTLARVWNPKDIQDPAIQQKVLAHMQAAERGLRRAQAAANQAGAASLTAILKSLELRSLDHVDNLKTLQKIVVSLEAAAPHGG