Scaffold Ga0180438_10163853

Overview

Basic Information

• Taxon OID: 3300017971
• Scaffold ID: Ga0180438_10163853
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1804
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033765	Metagenome	176	N
F052939	Metagenome	142	Y
F106097	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180438_101638532	F052939	GGAG	MNIEQKILDQIWDALMKNGKCPDYFNFATDLRYDHSINYNPDNPTISLVVEKAGRPTTYKISINEVKNEIIT
Ga0180438_101638533	F033765	GAGG	MKSLLKTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERLGNIQIIPESKVKTHIELIDSIRSSFLEYSSEDEERVLIQNLTDEQIISESPDEYYSGDMWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELTNEWEDQYNEFKLGLI
Ga0180438_101638535	F106097	AGGAG	MNRQQMLDILLEENVNGDWTDNYYFEKDNIHIVWCEALELWLMLDYKTFPKTFESSSTLEEAFKYVFEDQLSTEGIKQFLEERDLICAK