Scaffold Ga0187783_10002729

Overview

Basic Information

• Taxon OID: 3300017970
• Scaffold ID: Ga0187783_10002729
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13107
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086430	Metagenome	110	Y
F093545	Metagenome	106	Y
F104733	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187783_1000272917	F086430	AGGAG	MVETKCRSASGPEEIINKRMQNSGGLEADKTIKSGEGVRRVFHNIHLSGHQNQHGSDNKGEGDICGKPRGVV
Ga0187783_1000272921	F104733	AGGAGG	MGAGGGRSVMAKPLIAAFVLAATAGLLAGSARAADLGVPGPGVQAAECGPCGPCHVGYDFHPELRSTYGIAFDPRNFDTTQPYYYYGPVRAWPRYWCEHAVYFGKGKAPPPVEAPLPIVT
Ga0187783_1000272923	F093545	GGGGG	MSKFIVLGVALALLAAGTAAAFKLTHRQALAATAVDPAILHMQLQRAHEEMALP